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Homebody Eats » Recipes » Bread

Chocolate Chip Bagels

Published: Jul 25, 2024 by Jessica Mode · This content may include affiliate links.

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Indulge in a New York style bagel loaded with chocolate chips. These sweet bagels have an amazing flavor thanks to an overnight rest in the refrigerator.

chocolate chip bagels on a sheet tray.

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I love baking bagels at home. I've made everything from sweet bagel recipes (like cinnamon raisin and cinnamon sugar) to the classics (like poppy seed and salt bagels).

No matter the flavor, these homemade bagels taste so much better than the store-bought version.

I'll walk you through all of the best tips and tricks for making bagels at home including an overnight proof in the refrigerator, a quick boil, and the best method for adding chocolate chips so they're evenly distributed throughout the dough.

Don't forget to check out all of my favorite bread recipes if you want to bake even more homemade bread.

Jump to:
  • What You'll Learn In This Recipe
  • Secrets to Better Bread (FREE Guide)
  • Ingredients You Need
  • How To Make This Recipe
  • Expert Tips
  • Troubleshooting FAQs
  • More Bagel Recipes
  • Chocolate Chip Bagels

What You'll Learn In This Recipe

  • How to make bagel dough with step-by-step photos.
  • Why an overnight proof and boiling is so important for bagels.
  • Helpful tips and tricks for baking high-quality bagels.

Want to continue improving your bread baking skills? Grab my free eBook with 12 secrets to help you make the best bread of your life!

Secrets to Better Bread (FREE Guide)

12 easy-to-understand tips to take your bread from average to great in one convenient eBook.

    ​

    Ingredients You Need

    Here are the ingredients you'll need for chocolate chip bagels:

    chocolate chip bagel ingredients with labels.
    • Water: Bagels are a low-hydration dough, so you'll need a moderate amount of water. Be sure to heat the water to 110°F or 43°C before making this recipe.
    • Molasses: Many classic New York style bagels use barley malt. However, this ingredient can be difficult to find in grocery stores. I've found that molasses is a great substitute and still results in a crusty bagel with great flavor and texture.
    • Active dry yeast: This is an essential ingredient for bread making! Make sure your yeast has not expired.
    • Bread flour: Be sure to use bread flour for this recipe as it will give you the classic chewy texture that a bagel should have. Bread flour has a higher protein content (13.5% to 14.5% compared to all-purpose flour which only has 9.5% to 11.5%), so don't be tempted to substitute with all-purpose flour. Trust me, the bagels won't turn out as well with all-purpose flour.
    • Morton kosher salt: All bread recipes need salt to enhance the natural flavor of the bread. I do not recommend using table salt.
    • Chocolate chips: I prefer mini chocolate chips since they are better at distributing throughout the dough.
    • Cornmeal: This ingredient helps ensure the bagels don't stick to the pans.

    How To Make This Recipe

    Here's how to make chocolate chip bagels. Pay attention to the dough throughout this process, especially if you're new to baking bread at home.

    four numbered photos showing how to make chocolate chip bagel dough.

    1. Add warm water, molasses, and yeast to a small bowl and whisk together until dissolved.  Allow the mixture to sit until it’s foamy on top.

    2. In the bowl of a stand mixer add flour, granulated sugar, and salt. Then, slowly combine the water and yeast mixture with the flour on low speed, just until a shaggy dough forms. Scrape down the sides and increase speed to medium as needed, until the majority of the loose flour is incorporated into the dough.

    This dough can also be made without a mixer. Check out the recipe card below for hand-mixing instructions.

    3. Once a shaggy dough has formed, increase the speed to medium-high, and set a timer for 10 minutes to allow the dough to knead. This step is really important because the act of kneading the flour with water helps the gluten net to form. This is what will give your bagels great crumb and texture.

    Once the dough is fully kneaded, allow it to slightly cool (so it doesn't melt the chocolate), then hand-fold the chocolate morsels into the dough. 

    4. Roll the dough into a tight ball, then place it in a clean bowl and cover with plastic wrap. Allow the dough to rise in a warm, draft-free place until doubled in size, about 60 - 90 minutes. Rise time will vary depending on the temperature of your environment.

    four numbered photos showing how to shape chocolate chip bagel dough.

    5. Punch down the risen dough a few times to release some of the gas that formed. On a clean, un-floured surface, remove the dough from the bowl. Using a bench scraper or knife, divide the dough into pieces weighing 4 ounces (113 grams).

    Working with one piece of dough at a time, and keeping the others covered with a tea towel, roll the dough into a ball.

    6. Push through the center of the ball using both thumbs to make a hole.

    7. Then, continue to stretch the bagel out until it reaches about 4 inches (10 cm) across. 

    8. Place completed bagels about 2 inches (5 cm) apart on the previously prepared baking sheets, and cover with plastic wrap.

    two numbered photos showing how to proof and boil chocolate chip bagels.

    9. Securely cover the bagels with plastic wrap so no air can get into the baking sheet. Allow the dough to proof overnight in the refrigerator for 12 - 18 hours.

    10. Fill a large pot or dutch oven about halfway full with water. Place over high heat to boil. Once the water is at a rolling boil, add in molasses, a tablespoon at a time, until the water is dark brown.

    Allow the bagels to boil for 30 seconds on the first side, then flip and boil for an additional 30 seconds on the second side. 

    Bake for 15 -19 minutes, rotating the pans halfway through baking, until bagels are golden brown and shiny on top. 

    Expert Tips

    • Storage: You can store the bagels for up to 4 days in an airtight container at room temperature. I suggest toasting to reheat. Bagels can also be frozen for up to 6 months in the freezer. Slice them in half before you freeze them. Then, you can pop the frozen bagel straight into the toaster. You can find even more tips for storing bagels.
    • Don't have a mixer but still want to make this easy bagel recipe? No problem! Check out the hand-kneading instructions in the notes section of the recipe card.
    • It's really important to fully knead the dough until the proper amount of gluten has formed. This is an integral part of the bagel making process, so don't cut the kneading time short!
    • It's really important how you incorporate the chocolate chips into the bagel mixture. If you try mixing the chocolate chips into the dough with a mixer, they will melt. Alternatively, if you fold the chocolate chips in as you're forming the bagels, it will result in large hollow holes once baked. To evenly distribute the chocolate chips, hand fold the chocolate chips into the dough before proofing.

    Troubleshooting FAQs

    Why are my bagels flat?

    There are a few common reasons your bagels are turning out flat:

    1. Be careful when handling the dough. After the bagels have been proofed overnight in the refrigerator, they are full of air. Be sure to carefully handle the bagels to avoid pushing the air out. Using a bench scraper to move the bagels will help with this issue.

    2. Check that the bagels have not proofed in the refrigerator for too long. If the bagels are overproofed, the dough will start to flatten and they won't retain proper air. The same can happen during the bulk fermentation stage if you allow the dough to rise for too long and it more than doubles in size.

    3. Don't open the oven door while the bagels are baking (except to rotate the pans halfway through baking). Oven spring, which is the final burst of rising that happens when the bagels are placed in the oven to cook, helps ensure your bagels are tall and fluffy. If you open the oven during the first few minutes of baking, you could hinder the oven spring resulting in flat bagels.

    Why are my bagels dense?

    Here are a few reasons your bagels are dense:

    1. Don't open the oven door while the bagels are baking (except to rotate the pans halfway through baking). Oven spring, which is the final burst of rising that happens when the bagels are placed in the oven to cook, helps ensure your bagels are tall and fluffy. If you open the oven during the first few minutes of baking, you could hinder the oven spring resulting in dense bagels.

    2. The bagel dough rose too much during the bulk fermentation stage or proofed too long in the refrigerator. If this happens, the dough will lose its elastic and bouncy texture, which will cause it to become dense.

    3. Be sure you properly mixed the dough during the kneading stage. It's important that gluten has formed during this stage. To check that the dough is ready, grab a piece of dough between your fingers, stretch it, and see if web fibers have developed. You should be able to pull the dough thin enough that light shines through. If your dough rips as soon as you start pulling, you need to continue kneading the dough. You want the dough to be able to stretch rather than tear.

    Why are my bagels so chewy and tough?

    Don't boil the bagels for too long or they can become overly chewy and tough. It's best to boil the bagels for just 30 seconds on each side.

    Overcooking the bagels can also cause them to become chewy and tough. I've found that baking my bagels at 450°F (230°C) for 15 - 19 minutes gives the bagels a golden brown color with the perfect amount of chew.

    Why are my bagels not browning?

    Check that your oven is properly heating. I like to use an oven thermometer to ensure that my oven is reaching 450°F (230°C). Allow both the oven and the pizza stone to preheat for at least 30 minutes to ensure it's properly heated.

    chocolate chip bagels on a sheet tray.

    More Bagel Recipes

    • cinnamon raisin bagels.
      Cinnamon Raisin Bagels
    • cinnamon sugar bagels.
      Cinnamon Sugar Bagels
    • sesame seed bagels on sheet tray.
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    Love this recipe? Please leave a 5-star ⭐⭐⭐⭐⭐ rating in the recipe card below. Don't forget to follow along on Instagram, Facebook, YouTube, and Pinterest for more recipes.

    chocolate chip bagels on a sheet tray.

    Chocolate Chip Bagels

    Indulge in a New York style bagel loaded with chocolate chips. These sweet bagels have an amazing flavor thanks to an overnight rest in the refrigerator.
    Author: Jessica Mode
    5 from 1 vote
    Print Recipe Pin Recipe
    Active Time 1 hour hr
    Cook Time 15 minutes mins
    Resting Time 12 hours hrs
    Total Time 13 hours hrs 15 minutes mins
    Course Breakfast
    Cuisine American
    Servings 13 bagels
    Calories 319 kcal

    Equipment

    • stand mixer with dough hook attachment
    • mixing bowl
    • baking sheets
    • kitchen scale
    • bench scraper or knife
    • pizza stone
    • large pot or dutch oven
    • slotted spoon or spider strainer
    • wire rack

    Ingredients
     
     

    • 2 cups plus 2 tablespoons lukewarm water (110°F or 43°C)
    • 1 tablespoon, plus several tablespoons for boiling molasses
    • 2 teaspoons active dry yeast
    • 7 cups bread flour
    • 3 tablespoons granulated sugar
    • 2 teaspoons Morton kosher salt
    • ¾ cup mini semisweet chocolate morsels
    • cornmeal for dusting

    Instructions
     

    • Add warm water, 1 tablespoon (17 grams) molasses, and yeast to a small bowl and whisk together until dissolved.  Allow the mixture to sit until it’s foamy on top, about 5 minutes.
    • Whisk together flour, granulated sugar, and salt in a stand mixer bowl. Fit stand mixer with the dough hook attachment (see notes below for hand kneading instructions). Combine the water and yeast mixture with the flour on low speed, just until a shaggy dough forms. Scrape down the sides and increase speed to medium as needed, until the majority of the loose flour is incorporated into the dough. Once a shaggy dough is formed, increase the speed to medium high, and set a timer for 10 minutes to allow the dough to knead. During this time, keep an eye on your stand mixer to ensure it doesn’t wiggle off the counter or overheat. If at any point your mixer becomes too hot, take a break or begin hand kneading (see notes). The dough is done kneading when it is flexible and bouncy to the touch. To check that the dough is ready, grab a piece of dough between your fingers, stretch it, and see if web fibers have developed. You should be able to pull the dough thin enough that light shines through. If your dough rips as soon as you start pulling, you need to continue kneading the dough. You want the dough to be able to stretch rather than tear.
    • Allow the dough to slightly cool (so it doesn't melt the chocolate), then hand-fold the chocolate morsels into the dough. Roll the dough into a tight ball, then place it in a clean bowl and cover with plastic wrap. Allow the dough to rise in a warm, draft-free place until doubled in size, about 60 - 90 minutes. Rise time will vary depending on the temperature of your environment.
    • While the dough is rising, prepare two baking sheets generously sprinkled with cornmeal. Set aside.
    • Punch down the risen dough a few times to release some of the gas that formed. On a clean, un-floured surface, remove the dough from the bowl. Using a bench scraper or knife, divide the dough into pieces weighing 4 ounces (113 grams).
    • Working with one piece of dough at a time, and keeping the others covered with a tea towel, roll the dough into a ball. Push through the center of the ball using both thumbs to make a hole. Then, continue to stretch the bagel out until it reaches about 4 inches (10 cm) across. Be sure not to flatten the bagel too much throughout this process. Place completed bagels about 2 inches (5 cm) apart on the previously prepared baking sheets, and cover with plastic wrap. Repeat until all pieces of the dough have been shaped.
    • Securely cover the bagels with plastic wrap so no air can get into the baking sheet. Allow dough to proof overnight in the refrigerator for 12 - 18 hours.
    • Arrange the oven racks to the upper and lower thirds of the oven. Place a pizza stone on each of the racks, then heat oven to 450°F (230°C). Allow the oven and pizza stones to preheat for at least 30 minutes.
    • Fill a large pot or dutch oven about halfway full with water. Place over high heat to boil. Once the water is at a rolling boil, add in molasses, a tablespoon at a time, until the water is dark brown.
    • Remove the bagels from the refrigerator. They will have puffed up slightly overnight. Gently place as many bagels into the boiling water as will comfortably fit without over crowding the pot or dutch oven. Allow the bagels to boil for 30 seconds on the first side, then flip and boil for an additional 30 seconds on the second side. Using a slotted spoon, remove the bagel from the boiling water and place on a wire rack to cool. Repeat until all of the bagels have been boiled.
    • Carefully, remove the hot pizza stones from the oven. Transfer the cornmeal from the original baking sheets to the hot pizza stone to prevent sticking. Place bagels on the stone about 2 inches (5 cm) apart. Bake for 15 -19 minutes, rotating the pans halfway through baking, until bagels are golden brown and shiny on top. Keep an eye on your bagels (without opening the oven door) to ensure they're not getting too dark. Remove from the oven and let cool completely on a wire rack.

    Notes

    STORAGE: Bagels can be stored for up to 4 days in an airtight container at room temperature. I suggest toasting to reheat. Bagels can also be frozen for up to 6 months. I suggest slicing them in half before you freeze them in an airtight container or bag. Then, you can pop the frozen bagel straight into the toaster. Learn more about my best bagel storage tips.
    HAND KNEADING: Whisk together flour and salt. Slowly add in the water and yeast mixture and mix with a wooden spoon or clean hands until a shaggy dough forms.
    Then, begin kneading the dough by hand for a full 15 minutes (don’t cut this time short). If needed, switch out kneading the dough with a friend! If the dough is sticking to the counter, add more flour, a tablespoon at a time, to prevent this.
     The dough is done kneading when it is flexible and bouncy to the touch. To check that the dough is ready, grab a piece of dough between your fingers, stretch it, and see if web fibers have developed. You should be able to pull the dough thin enough that light shines through. If your dough rips as soon as you start pulling, you need to continue kneading the dough. You want the dough to be able to stretch rather than tear.
    Instant Yeast: You can substitute active dry yeast for instant yeast. Use the same amount as is listed in the recipe.
    Don't have a pizza stone? You can use a light-colored sheet pan instead. 
    Need help troubleshooting what went wrong with your bagels? See the full troubleshooting guide above!

    Nutrition

    Serving: 1bagelCalories: 319kcalCarbohydrates: 58gProtein: 9gFat: 5gSaturated Fat: 2gPolyunsaturated Fat: 1gMonounsaturated Fat: 1gTrans Fat: 0.01gCholesterol: 1mgSodium: 363mgPotassium: 147mgFiber: 3gSugar: 8gVitamin A: 7IUVitamin C: 0.002mgCalcium: 20mgIron: 1mg
    Have you tried this recipe?Tag @homebody.eats on Instagram so we can see your creations!

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    Reader Interactions

    Comments

      5 from 1 vote

      Leave a Reply Cancel reply

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      Recipe Rating




    1. Bridget

      July 26, 2024 at 1:03 pm

      5 stars
      We loved these! The flavor is amazing and I was surprised how easily the dough came together.

      Reply
      • Jessica Mode

        July 27, 2024 at 3:44 pm

        I'm so glad to hear you loved the recipe 🙂

        Reply

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    Hi, I'm Jessica! Here, you'll find delicious & fresh recipes that will help you learn to master a new skill in the kitchen!

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